I followed Gtstorey's method (above) and everything worked out perfectly fine. I did have to call Montgomery about where my paperwork was at after about 3-4 week, but she looked it over that day and said it was complete. I gave them every part receipt that I had during the build, just like GTS did.
Next step after submitting paper to Montgomery was having the Inspector come look at the car. He mostly talked about his projects, glanced over my build and riveted the VIN on. We signed some papers and he said those papers along with insurance were all needed to get a plate, which was correct.
Final step, getting the plate. I would recommend dealing with a person who has done the plate for a kit car before. The lady I had, while very polite, had to ask the more seasoned lady many questions. Between the two of them, we got it all sorted with no real issues. One thing I will note, it was about $650 with the taxes and all, but I did get a custom Barber Racing license plate. That added about $150 to the overall cost. If you go the personalize route, you'll be driving on a temporary tag for about a month to a month and a half. My proper plate arrive maybe 5 days before the temporary one expired. If you just get a plane (boring) plate you walk out with it that day.