It does not cover the bellcrank area and the front part of the rods since that is farther to the front and there really is nothing around the bellcrank to support a cover. I like the looks of the bellcrank mechanism and don't mind that being exposed. The uglyness of factory plastic shifter mount did bug me a bit.The shifter boot looks great! Does it cover the belcranks and rods also? I have said quite a few times to my self that that was one of those things that I would like to address after I get it on the road. It will just give it more of a finished look. It is all in the small details.
The first frame seem to line up very well but we had to pull the two uprights in to get the bolts to go in. This one just seemed like it was off a more but all the bolts did go in, so if it is off, it's not off much.Not sure how off your subframe bolts were, but mine were off too by about a half of the bolt diameter. I had to use ratchet straps in both directions to get the bolts to go in. I think it's common.